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Intron Name: Anas_platyrhynchos_platyrhynchos_1_125537458_125538543_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125537458 - 125538543

Intron Length:

1086

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTATTA

5'SS Class:

major

3'SS Sequence:

TTCCTCTTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTCCTCTTCACA

Flanking Amino Acid:

SPTEYDRNKPAKEEIPECRS

Intron Amino Acid Position:

479

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

70.8

35.7

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

0.76

0.7

79.2

26.4

Minor 5ss

40.5

-1.1

3.3

56.6

47.5

Minor BPS

60.7

0.33

1.8

72.02

40.3

Associated Gene:

Gene:

SCML2

Ensembl Gene ID:

ENSAPLG00000010725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011200

125491278 - 125547725

56448

ENSAPLT00000036153

125487156 - 125547725

60570