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Intron Name: Anas_platyrhynchos_platyrhynchos_1_125538658_125542798_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125538658 - 125542798

Intron Length:

4141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTACA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTTCTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTTTTTACTT

Flanking Amino Acid:

LPRNDAHPSEAETLPIEENS

Intron Amino Acid Position:

517

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

82.6

29.6

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

84.1

0.77

0.7

80.6

24.7

Minor 5ss

36.1

-1.6

2.6

Minor BPS

70.1

0.71

1.5

86.64

33.8

Associated Gene:

Gene:

SCML2

Ensembl Gene ID:

ENSAPLG00000010725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036153

125487156 - 125547725

60570

ENSAPLT00000011200

125491278 - 125547725

56448