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Intron Name: Anas_platyrhynchos_platyrhynchos_1_125543081_125543760_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125543081 - 125543760

Intron Length:

680

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTATCCTGAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATCCTGAAAG

Flanking Amino Acid:

SRNRIQRRIEAASSTTGPDL

Intron Amino Acid Position:

611

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

74.1

37.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

65.6

0.35

1.2

67.8

Minor 5ss

59.1

0.31

2.3

74.3

Minor BPS

66.1

0.37

1.6

71.16

Associated Gene:

Gene:

SCML2

Ensembl Gene ID:

ENSAPLG00000010725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011200

125491278 - 125547725

56448

ENSAPLT00000036153

125487156 - 125547725

60570