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Intron Name: Anas_platyrhynchos_platyrhynchos_1_125543925_125545279_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125543925 - 125545279

Intron Length:

1355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTATGACAC

5'SS Class:

major

3'SS Sequence:

CTTCCTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TTGTGTTTATTC

Flanking Amino Acid:

APHAELFRRHEIDGKALLLL

Intron Amino Acid Position:

666

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.1

60.7

38.1

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

85.5

0.8

0.7

80.5

24.7

Minor 5ss

40.8

-1

3.1

55.4

42.2

Minor BPS

50.5

-0

65.28

41.5

Associated Gene:

Gene:

SCML2

Ensembl Gene ID:

ENSAPLG00000010725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036153

125487156 - 125547725

60570

ENSAPLT00000011200

125491278 - 125547725

56448