Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12558275_12561187_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12558275 - 12561187

Intron Length:

2913

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTATG

5'SS Class:

strong_major

3'SS Sequence:

GTGTGTTGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAA

U12 Branch Point Sequence:

TCTCTCTCAAAC

Flanking Amino Acid:

YGNLRFYFSMGGTCDSGESH

Intron Amino Acid Position:

478

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

81.8

38.5

Major BPS

73.4

0.58

0.9

75.3

29.7

Major PPT

70.9

0.47

1.1

64.5

45.9

Minor 5ss

38.9

-1.2

2.8

43.3

43.8

Minor BPS

54.4

0.12

1.7

65.16

40.1

Associated Gene:

Gene:

RELN

Ensembl Gene ID:

ENSAPLG00000011317

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047207

12456661 - 12742790

286130

ENSAPLT00000011979

12456661 - 12742790

286130