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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125586858_125587088_F

Intron Information:

Intron Rank:
149303
Intron Class:
major
Intron Phase:
Intron Coordinates:
125586858 - 125587088
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
ATCTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TACTTTTTACGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.7
0.71
0.9
73
41.6
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
46.7
-0.3
1.9
50.92
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030300
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022886
125585985 - 125587582
1598