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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12566655_12581785_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12566655 - 12581785
Intron Length:
15131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
GTAACATCACCT
Flanking Amino Acid:
WLFFPGATVKHSCQSDGNSI
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
79.9
36
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
85.8
0.8
0.8
80
32.2
Minor 5ss
40.2
-1.1
2.7
50
46.3
Minor BPS
45
-0.3
2
64.54
44.8

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130