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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125690703_125692913_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125690703 - 125692913
Intron Length:
2211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGATCGATAATT
Flanking Amino Acid:
LDCNRINALRDFLQENYPSF
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.6
0.76
0.8
82.1
34.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
50.3
0.09
2.3
74.76
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037924
125689328 - 125714031
24704