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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125693118_125694212_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125693118 - 125694212
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
ACTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTCTCCATGACT
Flanking Amino Acid:
VKKLQSLEPMELLGSPWRNV
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58.7
43
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
85.5
0.8
0.8
77.2
36.4
Minor 5ss
42.8
-0.8
2.8
47.7
47.7
Minor BPS
65.6
0.57
1.7
80.17
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037924
125689328 - 125714031
24704