About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125695570_125696455_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125695570 - 125696455
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACCAC
5'SS Class:
major
3'SS Sequence:
ATTTTATATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTACATTT
Flanking Amino Acid:
LDPNKIAAIREFLATNFPNY
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
58.3
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.2
0.68
0.9
75
38.5
Minor 5ss
43.6
-0.7
3
58.6
46.2
Minor BPS
49.2
0.02
2
76.99
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037924
125689328 - 125714031
24704