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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125698365_125700904_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125698365 - 125700904
Intron Length:
2540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATCACATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTTCTGAATC
Flanking Amino Acid:
TRVRPLVLKPKPVGFTYRSS
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
80.3
34.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.5
0.53
0.9
65.4
39.5
Minor 5ss
39.1
-1.2
3.1
61.3
43
Minor BPS
69.3
0.59
1.4
75.75
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037924
125689328 - 125714031
24704