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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125704469_125707202_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125704469 - 125707202
Intron Length:
2734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTGCA
5'SS Class:
major
3'SS Sequence:
CTTCACTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTCTCTTCACT
Flanking Amino Acid:
NVHHVPQLAYGSGGLSVLTE
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
69.6
34.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
82
0.72
0.8
72.9
37
Minor 5ss
33.2
-1.9
3.1
38.9
41.3
Minor BPS
70.4
0.72
1.7
88.99
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037924
125689328 - 125714031
24704