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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125725450_125726139_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125725450 - 125726139
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCTAG
5'SS Class:
major
3'SS Sequence:
TGTATTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TTCCTCTGTATT
Flanking Amino Acid:
TTEDLFAVIHRSKRKVLGRK
Intron Amino Acid Position:
1245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
63.8
38.8
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
78.9
0.65
1
72.3
42.5
Minor 5ss
37.8
-1.4
3
46.5
48.8
Minor BPS
49
0
1.8
69.55
41.4

Associated Gene:

Gene:
NHS
Ensembl Gene ID:
ENSAPLG00000011104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045546
125724825 - 125747364
22540
ENSAPLT00000034301
125724825 - 125768731
43907
ENSAPLT00000011553
125724825 - 125747364
22540