Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125726267_125726768_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125726267 - 125726768

Intron Length:

502

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

GTCCTTATCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

CTGTCCTTATCT

Flanking Amino Acid:

AGGTEEPSLKESSPSDDSIM

Intron Amino Acid Position:

1203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

1.2

78.8

38.3

Major BPS

78.8

0.72

67.9

40.1

Major PPT

71.6

0.49

0.8

69.8

35.2

Minor 5ss

37.3

-1.4

2.8

50.6

45.6

Minor BPS

71.8

0.76

1.6

83.61

43.6

Associated Gene:

Gene:

NHS

Ensembl Gene ID:

ENSAPLG00000011104

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045546

125724825 - 125747364

22540

ENSAPLT00000034301

125724825 - 125768731

43907

ENSAPLT00000011553

125724825 - 125747364

22540