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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125729721_125734122_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
125729721 - 125734122
Intron Length:
4402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACAAATC
5'SS Class:
major
3'SS Sequence:
ACGTGTACCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTTACGTGTACC
Flanking Amino Acid:
SSCIIPINVTDSDESPVARE
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
65.1
39
Major BPS
72.7
0.56
1
75
30.1
Major PPT
57.7
0.17
0.9
48.1
39.8
Minor 5ss
36.5
-1.5
3.4
48.7
42.5
Minor BPS
46.5
-0.2
2.5
68.54
42.7

Associated Gene:

Gene:
NHS
Ensembl Gene ID:
ENSAPLG00000011104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045546
125724825 - 125747364
22540