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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125734316_125745053_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125734316 - 125745053
Intron Length:
10738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TATTCGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGATTCTGAATG
Flanking Amino Acid:
QAIKDRHFLSSHPPEDEDTD
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.1
0.74
0.9
77
36.8
Minor 5ss
41
-1
3
59.3
39
Minor BPS
59.8
0.17
1.5
61.73
40.1

Associated Gene:

Gene:
NHS
Ensembl Gene ID:
ENSAPLG00000011104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011553
125724825 - 125747364
22540