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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125736563_125745053_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125736563 - 125745053
Intron Length:
8491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTCACATTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTTTTTTCACA
Flanking Amino Acid:
QAIKDRHFLSFNSTRSPSPV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.3
0.57
0.9
69.2
35.8
Minor 5ss
41
-1
3
59.3
39
Minor BPS
63.3
0.41
1.7
73.92
38.7

Associated Gene:

Gene:
NHS
Ensembl Gene ID:
ENSAPLG00000011104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045546
125724825 - 125747364
22540
ENSAPLT00000034301
125724825 - 125768731
43907