Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125745188_125747168_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125745188 - 125747168

Intron Length:

1981

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCAAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TCCTCCAAAACA

Flanking Amino Acid:

AKQHLRALRREHRSRGDNRE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.9

33.5

Major BPS

83.9

0.84

73.9

41.3

Major PPT

0.32

59.2

34.6

Minor 5ss

33.9

-1.8

3.5

49.9

46.5

Minor BPS

54.2

0.13

67.8

44.7

Associated Gene:

Gene:

NHS

Ensembl Gene ID:

ENSAPLG00000011104

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011553

125724825 - 125747364

22540

ENSAPLT00000045546

125724825 - 125747364

22540

ENSAPLT00000034301

125724825 - 125768731

43907