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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12582027_12585195_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12582027 - 12585195
Intron Length:
3169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTTAC
5'SS Class:
major
3'SS Sequence:
CATTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TCTAATTCAATA
Flanking Amino Acid:
SADWTQLEKISAPSNVSTII
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
72.2
33.5
Major BPS
79.4
0.73
1
80.1
32
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
42.9
-0.8
2.4
52.8
44.4
Minor BPS
49
-0
1.7
61.08
39.3

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130