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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12585293_12602337_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12585293 - 12602337
Intron Length:
17045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGCTTTTCACA
Flanking Amino Acid:
TTASVLQFSLGSGSCRFSYS
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.8
0.76
0.8
79.4
32.6
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
54.8
0.14
1.7
67.7
39.3

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130