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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125984052_125992506_F

Intron Information:

Intron Rank:
132464
Intron Class:
major
Intron Phase:
Intron Coordinates:
125984052 - 125992506
Intron Length:
8455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTCTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.66
1
73.6
40.4
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
64.9
0.55
2
84.22
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021192
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028253
125983240 - 125993935
10696