Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126047841_126052108_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

126047841 - 126052108

Intron Length:

4268

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTTAGGGTT

5'SS Class:

major

3'SS Sequence:

AGCCACCATTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACAAAAT

U12 Branch Point Sequence:

TCTTCTGGCATC

Flanking Amino Acid:

VSSFKAIKLGGLLIEMFCIY

Intron Amino Acid Position:

423

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.48

1.2

41.8

Major BPS

49.7

-0

1.1

55.6

Major PPT

45.6

-0.2

1.7

47.7

39.9

Minor 5ss

31.1

-2.2

3.6

40.1

45.7

Minor BPS

42.5

-0.6

2.4

58.09

41.8

Associated Gene:

Gene:

REPS2

Ensembl Gene ID:

ENSAPLG00000011221

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042020

126046000 - 126105416

59417

ENSAPLT00000017467

126046000 - 126106510

60511