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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126049810_126052200_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126049810 - 126052200
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CCTGATTTAACT
Flanking Amino Acid:
QAEENSSAKKEVVLVQPPSK
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
86.3
0.82
0.7
80.9
24.2
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
59
0.36
1.7
72
45.3

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039939
126046000 - 126106510
60511
ENSAPLT00000029376
126046000 - 126104674
58675
ENSAPLT00000026839
126046000 - 126106594
60595
ENSAPLT00000011757
126046000 - 126106558
60559
ENSAPLT00000043948
126046000 - 126106558
60559