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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126049810_126063796_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126049810 - 126063796
Intron Length:
13987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CCTGATTTAACT
Flanking Amino Acid:
ALPPRPSVSQEVVLVQPPSK
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74
36.1
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
86.3
0.82
0.7
80.9
24.2
Minor 5ss
38.6
-1.3
3
49.3
46.7
Minor BPS
59
0.36
1.7
72
45.3

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031472
126046000 - 126104674
58675