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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126049810_126077161_R

Intron Information:

Intron Rank:
9
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
126049810 - 126077161
Intron Length:
27352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTTGCTTT
5'SS Class:
weak_minor
3'SS Sequence:
TTCTCCCTTGCAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CCTGATTTAACT
Flanking Amino Acid:
KIFQQNTQGKEVVLVQPPSK
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.2
66.3
39.9
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
86.3
0.82
0.7
80.9
24.2
Minor 5ss
63.8
0.47
2.2
74.8
34.8
Minor BPS
59
0.36
1.7
72
45.3

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044177
126046000 - 126105416
59417