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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126077281_126094586_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
126077281 - 126094586
Intron Length:
17306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCTG
5'SS Class:
major
3'SS Sequence:
AGCACATCAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCCTCCTTAGGT
Flanking Amino Acid:
SKAGFVFHITEDAMKKGEEP
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.6
46.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
51.6
0.04
1
44.5
36
Minor 5ss
32.3
-2
3.7
46.2
49.1
Minor BPS
59.5
0.38
1.9
75.34
47.4

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042020
126046000 - 126105416
59417