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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126077304_126091396_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
126077304 - 126091396
Intron Length:
14093

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCAATAGGA
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGCTTTTAAAT
Flanking Amino Acid:
CEQGSYLQSTESYSSTSIED
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.4
52.2
41.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.4
0.73
0.6
81.9
23
Minor 5ss
20.8
-3.4
3.9
25.8
37.8
Minor BPS
58.2
0.34
1.4
69.73
41.5

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044177
126046000 - 126105416
59417