About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126079880_126084578_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126079880 - 126084578
Intron Length:
4699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAG
U12 Branch Point Sequence:
TTTGTTTTAGCA
Flanking Amino Acid:
KDFQHLTVKTAPQEPNALKA
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
54.8
0.12
1.7
57.4
49.1
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
61.8
0.37
1.6
74.26
38.1

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029376
126046000 - 126104674
58675
ENSAPLT00000011757
126046000 - 126106558
60559
ENSAPLT00000043948
126046000 - 126106558
60559
ENSAPLT00000039939
126046000 - 126106510
60511
ENSAPLT00000031472
126046000 - 126104674
58675