Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12608371_12617113_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12608371 - 12617113

Intron Length:

8743

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CCATTTCGAACG

Flanking Amino Acid:

YHQQELNPNMWSECRNCEVG

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.8

80.1

28.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

83.3

0.75

0.8

77.6

31.2

Minor 5ss

39.5

-1.2

2.9

49.4

41.4

Minor BPS

-0.5

1.8

44.84

41.5

Associated Gene:

Gene:

RELN

Ensembl Gene ID:

ENSAPLG00000011317

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047207

12456661 - 12742790

286130

ENSAPLT00000011979

12456661 - 12742790

286130