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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126084645_126086761_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126084645 - 126086761
Intron Length:
2117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTAATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTAATA
Flanking Amino Acid:
LQDTKKDDKQALKVSTAVKT
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
68.7
37.6
Major BPS
100
1.24
0.5
100
0
Major PPT
66.1
0.36
1.2
73.5
40.2
Minor 5ss
44.9
-0.6
2.6
57.3
47
Minor BPS
71.7
0.68
1.3
78
33.3

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029376
126046000 - 126104674
58675
ENSAPLT00000011757
126046000 - 126106558
60559
ENSAPLT00000043948
126046000 - 126106558
60559
ENSAPLT00000031472
126046000 - 126104674
58675