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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126086832_126091437_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126086832 - 126091437
Intron Length:
4606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
ATCACTGTAATA
Flanking Amino Acid:
QQTRDFSRTEKTAAEEVPDN
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
79.2
0.66
0.8
77.2
31.6
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
49.2
-0
2
61.74
39.2

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029376
126046000 - 126104674
58675
ENSAPLT00000011757
126046000 - 126106558
60559
ENSAPLT00000043948
126046000 - 126106558
60559
ENSAPLT00000031472
126046000 - 126104674
58675