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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126091385_126091429_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
126091385 - 126091429
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGAGCA
5'SS Class:
major
3'SS Sequence:
AGCAATAGGACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAGCAAT
U12 Branch Point Sequence:
GCTACCTGCAGA
Flanking Amino Acid:
TRDFSRTEVRSLTVAVVSLK
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
0.9
66.5
32.3
Major BPS
44.5
-0.3
1.5
48.4
43.5
Major PPT
48.4
-0
1.2
39.1
42.7
Minor 5ss
31.4
-2.1
3.2
39
46.3
Minor BPS
43.5
-0.5
2.1
53.58
44.5

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039939
126046000 - 126106510
60511