About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126094817_126096563_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
126094817 - 126096563
Intron Length:
1747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCGTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGGAA
U12 Branch Point Sequence:
GGCTGGGGAAAC
Flanking Amino Acid:
KLPIPELSHIWELSDVDCDG
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
42.9
-0.4
1.5
34.8
43.8
Major PPT
76.2
0.59
0.8
69.4
31.3
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
30.2
-1.5
2.5
37.65
39.9

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011757
126046000 - 126106558
60559
ENSAPLT00000031472
126046000 - 126104674
58675
ENSAPLT00000044177
126046000 - 126105416
59417
ENSAPLT00000026839
126046000 - 126106594
60595
ENSAPLT00000043948
126046000 - 126106558
60559
ENSAPLT00000025271
126046000 - 126108299
62300
ENSAPLT00000042020
126046000 - 126105416
59417
ENSAPLT00000017467
126046000 - 126106510
60511
ENSAPLT00000039939
126046000 - 126106510
60511