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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126096628_126098912_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126096628 - 126098912
Intron Length:
2285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AGTTTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAATTTCAAAC
Flanking Amino Acid:
LQPDLNSFISGSVAKNFFTK
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.7
0.44
1
63.7
37.6
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
49.3
-0
1.6
61.3
37.6

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017467
126046000 - 126106510
60511
ENSAPLT00000039939
126046000 - 126106510
60511
ENSAPLT00000011757
126046000 - 126106558
60559
ENSAPLT00000031472
126046000 - 126104674
58675
ENSAPLT00000044177
126046000 - 126105416
59417
ENSAPLT00000026839
126046000 - 126106594
60595
ENSAPLT00000043948
126046000 - 126106558
60559
ENSAPLT00000025271
126046000 - 126108299
62300
ENSAPLT00000042020
126046000 - 126105416
59417