About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126102954_126106434_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126102954 - 126106434
Intron Length:
3481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTGAT
U12 Branch Point Sequence:
GTTTTTGCAACA
Flanking Amino Acid:
MEPKSPPMSPI
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
74.4
0.55
1
70
40.3
Minor 5ss
41.2
-1
2.9
54.6
44.5
Minor BPS
48.8
-0
2.1
67.57
39.2

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043948
126046000 - 126106558
60559