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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126106559_126108248_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
126106559 - 126108248
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCT|GCACGGGGA
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TGCGTTTTACCA
Flanking Amino Acid:
EGSKHPSALAITEVCGAKRV
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.5
53.9
40.2
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
83.7
0.76
0.7
77.7
31.1
Minor 5ss
20.1
-3.4
4.3
37.3
47.4
Minor BPS
49.2
-0
1.7
58.49
42

Associated Gene:

Gene:
REPS2
Ensembl Gene ID:
ENSAPLG00000011221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025271
126046000 - 126108299
62300