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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126167145_126169008_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
126167145 - 126169008
Intron Length:
1864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTCCATGAATT
Flanking Amino Acid:
LTVQWLPDVTRPEGKDYALH
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.2
0.48
1
67.4
38
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
58.8
0.36
1.7
78.66
36.8

Associated Gene:

Gene:
RBBP7
Ensembl Gene ID:
ENSAPLG00000011785
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012335
126166168 - 126174913
8746
ENSAPLT00000026320
126166168 - 126174449
8282