Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126170217_126170816_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

126170217 - 126170816

Intron Length:

600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAAAAAC

5'SS Class:

major

3'SS Sequence:

TTCTTATTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TGGTTCTTATTT

Flanking Amino Acid:

GHLLSASDDHTVCLWDISAG

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.2

0.38

1.3

68.4

36.7

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

89.1

0.88

0.7

29.8

Minor 5ss

34.5

-1.8

3.1

42.6

37.8

Minor BPS

63.1

0.49

1.6

75.91

41.4

Associated Gene:

Gene:

RBBP7

Ensembl Gene ID:

ENSAPLG00000011785

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026320

126166168 - 126174449

8282

ENSAPLT00000012335

126166168 - 126174913

8746