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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12617193_12627455_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12617193 - 12627455
Intron Length:
10263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
ALAQQLCEQGAEMHSDSIIL
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
86.3
0.82
0.7
85.7
27.2
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011979
12456661 - 12742790
286130
ENSAPLT00000047207
12456661 - 12742790
286130