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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126184140_126185191_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126184140 - 126185191
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
CATCCTGCAACT
Flanking Amino Acid:
NKALLQMAEEKTVRDKEYKG
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
83.5
0.75
0.8
81.6
30.5
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
46.6
-0.1
2.2
66.68
44

Associated Gene:

Gene:
TXLNG
Ensembl Gene ID:
ENSAPLG00000012324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012857
126183819 - 126196075
12257