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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126185288_126185816_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126185288 - 126185816
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTA
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AGCCACATAAGT
Flanking Amino Acid:
FTTFRQEMEKMTKKIKKLEK
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
77.1
34.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84.6
0.78
0.7
81.1
30.9
Minor 5ss
42.8
-0.8
3
58.7
45.7
Minor BPS
43.9
-0.3
2
58.93
43.4

Associated Gene:

Gene:
TXLNG
Ensembl Gene ID:
ENSAPLG00000012324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012857
126183819 - 126196075
12257