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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126188129_126189160_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126188129 - 126189160
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
CTATTCTTAGTA
Flanking Amino Acid:
EEKHQREREFLLKEATESRH
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.4
32.2
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
80.7
0.69
0.9
73.5
41.9
Minor 5ss
34.6
-1.8
3.3
45.9
43.7
Minor BPS
60.8
0.33
1.6
67.44
39.6

Associated Gene:

Gene:
TXLNG
Ensembl Gene ID:
ENSAPLG00000012324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012857
126183819 - 126196075
12257