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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126190805_126191518_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
126190805 - 126191518
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTAATAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATACTG
Flanking Amino Acid:
ELQRHNKTLKEENMQQAREE
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
53.7
0.08
1.1
53.8
38.5
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
48.4
-0.2
1.9
61.17
41.1

Associated Gene:

Gene:
TXLNG
Ensembl Gene ID:
ENSAPLG00000012324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012857
126183819 - 126196075
12257