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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126191690_126194912_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126191690 - 126194912
Intron Length:
3223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTAATGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATAAAT
Flanking Amino Acid:
AALCKKYADLLEESRNVQKQ
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
64.5
0.33
1
63.8
41.8
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
65
0.55
1.7
83.52
36.5

Associated Gene:

Gene:
TXLNG
Ensembl Gene ID:
ENSAPLG00000012324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012857
126183819 - 126196075
12257