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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126195005_126195723_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126195005 - 126195723
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
ESEKHKEKTLGKEVLLLMQA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29.8
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
86.7
0.82
0.6
83.7
24.6
Minor 5ss
43.5
-0.7
2.7
59
45.7
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
TXLNG
Ensembl Gene ID:
ENSAPLG00000012324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012857
126183819 - 126196075
12257