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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126228959_126231579_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
126228959 - 126231579
Intron Length:
2621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGCATTATGT
Flanking Amino Acid:
QRPLSAAPEGRFPPGDLCSC
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.8
0.69
0.8
78.8
34.4
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
49.3
0.03
2.2
76.82
45.6

Associated Gene:

Gene:
CTPS2
Ensembl Gene ID:
ENSAPLG00000012743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013342
126228663 - 126295409
66747