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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126241967_126245437_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126241967 - 126245437
Intron Length:
3471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
SMFCHVEPEQVIFIHDVSST
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.2
84.4
33.5
Major BPS
79.2
0.72
1
75
40
Major PPT
87.7
0.85
0.7
90
24.6
Minor 5ss
33.8
-1.8
2.6
44.2
43
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
CTPS2
Ensembl Gene ID:
ENSAPLG00000012743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013342
126228663 - 126295409
66747