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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126245960_126248173_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126245960 - 126248173
Intron Length:
2214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TACTATTTTACT
Flanking Amino Acid:
LAINHKLDLMYIDSTELERS
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
76.6
33.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
30.5
-2.2
3.2
36.4
42
Minor BPS
55.6
0.26
1.8
73.74
42.9

Associated Gene:

Gene:
CTPS2
Ensembl Gene ID:
ENSAPLG00000012743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013342
126228663 - 126295409
66747