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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126249118_126250032_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126249118 - 126250032
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGCTGTTAAATT
Flanking Amino Acid:
WARTKKKPFLGVCLGMQLAV
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.5
0.75
0.7
81.7
30.3
Minor 5ss
38.4
-1.3
3
45.7
43.4
Minor BPS
48.6
-0
2
67.55
44.3

Associated Gene:

Gene:
CTPS2
Ensembl Gene ID:
ENSAPLG00000012743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013342
126228663 - 126295409
66747