About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126250096_126250704_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126250096 - 126250704
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAACT
Flanking Amino Acid:
EFARNCLNWKDANSVEFDPD
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80.7
0.69
0.8
77.4
35.9
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
70.4
0.72
1.4
84.09
36.9

Associated Gene:

Gene:
CTPS2
Ensembl Gene ID:
ENSAPLG00000012743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013342
126228663 - 126295409
66747